Setup: Suppose we have a function, \(f: \mathbb{R}^n \rightarrow \mathbb{R}\), and we want to test code that computes \(\nabla f\). (Note that these techniques also apply when \(f\) has multivariate output.)
Finitedifference approximation
The main way that people test gradient computation is by comparing it against a finitedifference (FD) approximation to the gradient:
where \(\boldsymbol{d} \in \mathbb{R}^n\) is an arbitrary "direction" in parameter
space. We will look at many directions when we test. Generally, people take the
\(n\) elementary vectors as the directions, but random directions are just as good
(and you can catch bugs in all dimensions with less than \(n\) of them).
Always use the twosided difference formula. There is a version which doesn't add and subtract, just does one or the other. Do not use it ever.
Make sure you test multiple inputs (values of \(\boldsymbol{x}\)) or any thing else the function depends on (e.g., the minibatch).
What directions to use: When debugging, I tend to use elementary directions because they tell me something about which dimensions that are wrong... this doesn't always help though. The random directions are best when you want the test cases to run really quickly. In that case, you can switch to check a few random directions using a spherical distribution—do not sample them from a multivariate uniform!
Always test your implementation of \(f\)! It's very easy to correctly compute the gradient of the wrong function. The FD approximation is a "selfconsistency" test, it does not validate \(f\) only the relationship between \(f\) and \(\nabla\! f\).
Obviously, how you test \(f\) depends strongly on what it's supposed to compute.
 Example: For a conditional random field (CRF), you can also test that your implementation of a dynamic program for computing \(\log Z_\theta(x)\) is correctly by comparing against bruteforce enumeration of \(\mathcal{Y}(x)\) on small examples.
Similarly, you can directly test the gradient code if you know a different way to compute it.
 Example: In a CRF, we know that the \(\nabla \log Z_\theta(x)\) is a feature expectation, which you can also test against a bruteforce enumeration on small examples.
Why not just use the FD approximation as your gradient?
For lowdimensional functions, you can straightup use the finitedifference approximation instead of rolling code to compute the gradient. (Take \(n\) axisaligned unit vectors for \(\boldsymbol{d}\).) The FD approximation is very accurate. Of course, specialized code is probably a little more accurate, but that's not really why we bother to do it! The reason why we write specialized gradient code is not improve numerical accuracy, it's to improve efficiency. As I've ranted before, automatic differentiation techniques guarantee that evaluating \(\nabla f(x)\) gradient should be as efficient as computing \(f(x)\) (with the caveat that space complexity may increase substantially  i.e., spacetime tradeoffs exists). FD is \(\mathcal{O}(n \cdot \textrm{runtime } f(x))\), where as autodiff is \(\mathcal{O}(\textrm{runtime } f(x))\).
How to compare vectors
Absolute difference is the devil. You should never compare vectors in absolute difference (this is Lecture 1 of any numerical methods course). In this case, the problem is that gradients depend strongly on the scale of \(f\). If \(f\) takes tiny values then it's easy for differences to be lower than a tiny threshold.
Most people use relative error \(= \frac{\textbf{want}  \textbf{got}}{\textbf{want}}\), to get a scalefree error measure, but unfortunately relative error chokes when \(\textbf{want}\) is zero.
I compute several error measures with a script that you can import from my github arsenal.math.checkgrad.{fdcheck}.
I use two metrics to test gradients:

Relative error (skipping zeros): If relative error hits a zero, I skip it. I'll rely on the other measure.

Pearson correlation: Checks the direction of the gradient, but allows a scale and shift transformation. This measure doesn't have trouble with zeros, but allows scale and shift problems to pass by. Make sure you fix those errors! (e.g. In the CRF example, you might have forgotten to divide by \(Z(x)\), which not really a constant... I've made this exact mistake a few times.)
I also look at some diagnostics, which help me debug stuff:

Accuracy of predicting the sign {+,,0} of each dimension (or dot random product).

Absolute error (just as a diagnostic)

Scatter plot: When debugging, I like to scatter plot the elements of FD vs. my implementation.
All these measurements (and the scatter plot) can be computed with arsenal.math.compare.{compare}, which I find super useful when debugging absolutely anything numerical.
Bonus tests
Testing modules: You can test the different modules of your code as well (assuming you have a composable modulebased setup). E.g., I test my DP algorithm independent of how the features and downstream loss are computed. You can also test feature and downstream loss modules independent of one another. Note that autodiff (implicitly) computes Jacobianvector products because modules are multivariate in general. We can reduce to the scalar case by taking a dot product of the outputs with a (fixed) random vector.
Something like this:
r = spherical(m) # fixed random vector output=m
h = lambda x: module.fprop(x).dot(r) # scalar function for use in fd
module.fprop(x) # propagate
module.outputs.adjoint = r. # set output adjoint to r, usually we set adjoint of scalar output=1
module.bprop()
ad = module.input.adjoint # grab the gradient
fd = fdgrad(h, x)
compare(fd, ad)
Integration tests: Test that running a gradientbased optimization algorithm is successful with your gradient implementation. Use smaller versions of your problem if possible. A related test for machine learning applications is to make sure that your model and learning procedure can (over)fit small datasets.
Test that batch = minibatch (if applicable). It's very easy to get this bit wrong. Broadcasting rules (in numpy, for example) make it easy to hide matrix conformability mishaps. So make sure you get the same results as manual minibatching (Of course, you should only do minibatching if are get a speedup from vectorization or parallelism. You should probably test that it's actually faster.)
Further reading: I've written about gradient approximations before, you might like these articles: gradientvector products, complexstep method. I strongly recommend learning how automatic differentiation works, I learned it from Justin Domke's course notes.